Chromosome AssembliesThe listings below have been developed and submitted to SGN by the individual tomato chromosome sequencing projects.
The AGP file describes the current best known sequence assembly of this chromosome. Descriptions of this file format are available from NCBI and from UCSC.
These files are also available for download via FTP.
Chromosome
| Accessioned Golden Path (AGP) | last modified Tue Apr 29 16:20:45 2008
GMT [download] |
| #Draft Tomato chromosome 1
|
| #autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
|
| S.lycopersicum-chr1 | 1 | 2600000 | 1 | N | 2600000 | contig | no | |
| S.lycopersicum-chr1 | 2600001 | 2717663 | 2 | F | C01HBa0032H01.1 | 1 | 117663 | + |
| S.lycopersicum-chr1 | 2717664 | 2900000 | 3 | N | 182337 | contig | no | |
| S.lycopersicum-chr1 | 2900001 | 2997174 | 4 | F | C01HBa0003D15.1 | 1 | 97174 | + |
| S.lycopersicum-chr1 | 2997175 | 3120000 | 5 | N | 122826 | contig | no | |
| S.lycopersicum-chr1 | 3120001 | 3308412 | 6 | F | C01HBa0216G16.2 | 1 | 188412 | + |
| S.lycopersicum-chr1 | 3308413 | 3358412 | 7 | N | 50000 | contig | no | |
| S.lycopersicum-chr1 | 3358413 | 3528570 | 8 | F | C01HBa0256E08.2 | 1 | 170158 | + |
| S.lycopersicum-chr1 | 3528571 | 3578570 | 9 | N | 50000 | contig | no | |
| S.lycopersicum-chr1 | 3578571 | 3733009 | 10 | F | C01HBa0252G05.2 | 1 | 154439 | + |
| S.lycopersicum-chr1 | 3733010 | 3783009 | 11 | N | 50000 | contig | no | |
| S.lycopersicum-chr1 | 3783010 | 3917111 | 12 | F | C01HBa0163B20.1 | 1 | 134102 | + |
| S.lycopersicum-chr1 | 3917112 | 3967111 | 13 | N | 50000 | contig | no | |
| S.lycopersicum-chr1 | 3967112 | 4078404 | 14 | F | C01HBa0033C15.1 | 1 | 111293 | + |
| S.lycopersicum-chr1 | 4078405 | 4600000 | 15 | N | 521596 | contig | no | |
| S.lycopersicum-chr1 | 4600001 | 4707798 | 16 | F | C01HBa0155M04.1 | 1 | 107798 | + |
| S.lycopersicum-chr1 | 4707799 | 5200000 | 17 | N | 492202 | contig | no | |
| S.lycopersicum-chr1 | 5200001 | 5307778 | 18 | F | C01HBa0329A12.1 | 1 | 107778 | + |
| S.lycopersicum-chr1 | 5307779 | 8800000 | 19 | N | 3492222 | contig | no | |
| S.lycopersicum-chr1 | 8800001 | 8922834 | 20 | F | C01HBa0108J06.1 | 1 | 122834 | + |
| S.lycopersicum-chr1 | 8922835 | 10400000 | 21 | N | 1477166 | contig | no | |
| S.lycopersicum-chr1 | 10400001 | 10523679 | 22 | F | C01HBa0159C14.1 | 1 | 123679 | + |
| S.lycopersicum-chr1 | 10523680 | 10900000 | 23 | N | 376321 | contig | no | |
| S.lycopersicum-chr1 | 10900001 | 11037173 | 24 | F | C01HBa0051C14.1 | 1 | 137173 | + |
| S.lycopersicum-chr1 | 11037174 | 16500000 | 25 | N | 5462827 | contig | no | |
| S.lycopersicum-chr1 | 16500001 | 16611737 | 26 | F | C01HBa0088L02.2 | 1 | 111737 | + |
| # END OF DRAFT CHROMOSOME BUILD. THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
|
| S.lycopersicum-chr1 | 16611738 | 60000000 | 27 | N | 43388263 | contig | no | |
| S.lycopersicum-chr1 | 60000001 | 60133957 | 28 | F | C01SLm0026F20.1 | 1 | 133957 | + |
| Other Chromosome 1 Resources | |
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